Assessment of genetic diversity of Haloxylon salicornicum genotypes, a native plant of Kuwait
Keywords:
Genetic diversity, H. salicornicum, RAPD, ISSR.Abstract
ABSTRACT
Haloxylon salicornicum is one of the most important native desert flora scattered in Kuwait. Despite its ecological and economical importance, H. salicornicum is endangered by severe loss. Unless great attention is paid towards its protection and documentation, it faces the danger of extinction. Due to lack of information on the genetic diversity of H. salicornicum, this study attempts to analyse samples collected from nine representative locations from the Kuwait desert. Diversity analysis was performed using RAPD and ISSR technique. Twenty five RAPD and 24 ISSR primers produced 946 and 1016 bands respectively. RAPD produced a relatively higher proportion of polymorphic bands (49.4%) compared with ISSR (47%). However, Mantel test shows a very good degree of fit (r =0.96) between RAPDs and ISSRs data. Thus, the data of both marker systems were combined to produce single dendrogram. This showed that samples collected from regions 4, 5, 7, 8A, and 8B, are the most related (PDV= 0.13- 0.15), whereas those collected from regions 2 and 6 are the most genetically similar (PDV =0.28- 0.25) respectively.
References
REFERENCES
Abou El-Nil, M., Sudhersan, C., Hussain, J. & Al-Melhem, S. 2000. Mass propagation of native desert plants Phase II: development of tissue culture technique. Kuwait Institute for Scientific Research, Report No. KISR5937, Kuwait.
Ali, S. I. & Qaiser, M. 2001. Flora of Pakistan, Chenopodiaceae Jointly published by Department of Botany, University of Karachi, Karachi, Pakistan & Missouri Botanical Press: Missouri Botanical Garden, St. Louis, Mussouri, USA 204: 185.
Al-Qurainy, F. H. 2007. Genetic distance within and between two populations as revealed by RAPD markers. Saudi Journal of Biological Sciences 14: 221-226.
Böer, B. & Sargeant, D. 1998. Desert perennials as plant and soil indicators in Eastern Arabia. Plant and Soil 199: 261–266.
Böer, B. & Warnken, J. 1996. Flora of the Jubail Marine Wildlife Sanctuary, Saudi Arabia. In ‘A Marine Wildlife Sanctuary for the Arabian Gulf. Environmental Research and Conservation Following the 1991 Gulf War Oil Spill’. (Eds. F Krupp, A. H. Abuzinada and I. A. Nader.). pp 290–301. (National Commission for Wildlife Conservation and Development: Riyadh, KSA). Senckenbergische Naturforschende Gesellschaft: Frankfurt).
Bornet B, & Branchard, M. 2001. Nonanchored inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting. Plant Molecular Biology Biol Reporter. 19: 209–215
Daoud, H. S. 1985. Flora of Kuwait. London: KPI Limited.
Dellaporta, S. L., Wood, I. & Hicks, I.B. 1983. Maize DNA mini-preparation: Version II Plant Molecular Biology. Reporter 1:19-21.
Engles, J. M. M., Rao, V. R., Brown, A. H. D. & Jackson,M.T. 2002. Managing plant genetic diversity, p. 487. CABI Publishing, UK.
FAO. 1998. The states of the world’s plant genetic resources for food and agriculture, p. 510. FAO, Rome, Italy.
Ghazanfar, S. A. & Fisher, M. 1998. Vegetation of Arabian Peninsula. Geobotany 25: 1–362.
Haider, N., Nabulsi, I. & MirAli, N. 2012. Phylogenetic relationships among date palm (Phoenix dactylifera L.) cultivars in Syria using RAPD and ISSR markers. Journal of Plant Biology Research 1(2): 12-24.
Halwagy, R. & Halwagy, M. 1974. Ecological Studies on the Desert of Kuwait. II. The Vegetation. Journal of the University of Kuwait 1: 87–95.
Ibrahim A. A., Mohammad A., Bakir, Haseeb A. K. Al Farhan, A.H., Al Homaidan, A.A., Ali H. B., Al Sadoon, M. & Mohammad S. 2010. A Brief Review of Molecular Techniques to Assess Plant Diversity. International. Journal of . Molecular . Science. 11, 2079-2096.
Joshi, S. P., Gupta,V. S., Aggarwal, K. R., Ranjekar, P.K. & Brar, D.S. 2000. Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza. TheorTheoretical and . Applied. Genetics. 100: 1311-1320.
Kantely, R.V., Zeng, X., Bennetzen, J.L. & B. Zehr, 1995. Assessment of genetic diversity in dent and popcorn (Zea mays L.) inbred lines using inter-simple sequence repeat (ISSR) amplification. Molecular. Breeding. 1: 365–373.
Karrar. G., Batanounv, K. H., & Mian, M. A. 1991. A rapid assessment of the impact of The Iraq-Kuwait conflict on terrestrial ecosystems. New York, US: UNEP, MEPA publications.
Mondal, T. K. 2002. Assessment of genetic diversity of tea (Camellia sinensis (L.) O Kuntze) by inter-simple sequence repeat polymerase chain reaction. Euphytica 128: 307–315.
Nazia, B., Sheraz, A., Tanoli, K., Farheen, S., Nighat, A., Salman, S., Ying, Z., Shahana U.K. & Abdul, M. 2010. In vitro antituberculosis activities of the constituents isolated from Haloxylon salicornicum. Bioorganic & Medicinal Chemistry Letters 20: 4173–4176.
Omar, S. A. & Bhat, N.R. 2008. Alteration of the Rhanterium epapposum plant community in Kuwait and restoration measures. International Journal of Environmental Studies 65(1): 139-55.
Omar, S. A., Misak, R., King, P., Shahid, Sh. A., Abo-Rizq, H., Grealish, G. & Roy, W. 2001. Mapping the vegetation of Kuwait through reconnaissance soil survey. Journal of Arid Environments 48: 341-55.
Qi X. H., Yang JH, Zhang MF. 2008. AFLP-based genetic diversity assessment among Chinese vegetable mustards (Brassica juncea (L.) Czern.). Genetic Resources and Crop Evolution 55:705–71.1
Roshier, D. A., Böer, B. B. & Osborne, P. E. 1996. The vegetation of Abu Dhabi and a preliminary classification of its plant associations. In ‘Desert Ecology of Abu Dhabi’. (Ed. P. E. Osborne.) pp. 50–65. (National Avian Research Centre: Abu Dhabi).
Salimath, S. S., Oliveira, A. C., Godwin, I. D. & Bennetzen, J.I. 1995. Assessment of genome origins and genetic diversity in the genus Eleusine with DNA markers. Genome 38: 757-763.
Sambrook, J., Fritsch, E. F. & Maniatis, T. 1989. Gel electrophoresis of DNA. In Molecular Cloning: A Laboratory Manual, 2nd Edition. Edited by J. Sambrook. New York: Cold Spring Harbor 601-619.
Sheng Y., Sheng W-H., Ke-Quan, P. E. I., & Ke-Ping, M. A. 2004. Population genetic structure of a dominant desert tree, Haloxylon ammodendron (Chenopodiaceae), in the Southeast Gurbantunggut Desert detected by RAPD and ISSR Markers. Acta Botanica Sinica 46(6): 675-681
STATSOFT, Inc. 2003. STATISTICA (data analysis software system), version 6. www.statsoft.com.
Tsumura, Y., Ohba, K. & Strauss, S. H. 1996. Diversity and inheritance of Inter-simple sequence repeat polymorphism in Douglus fir (Pseudotsuga menziessi) and sugi (Cryptomeria japonica). Theoretical and Applied Genetics Theor. Appl. Genet. 92: 40–45.
Williams J. G. K, Kubelik A.R, Livak K. J., Rafalski, J. A. & Tingey, S.V. 1990. DNA Polymorphism amplified by arbitrary primers as useful as genetic markers. Nucleic Acids Research. 18: 6531-6535.
Zaman, S., Padmesh, S., Bhat, N. R., & Tawfiq, H. 2006. Germination of some Kuwait’s native plants under saline condition. American-Eurasian Journal of. Agricultural. And & Environmental science. Sci., 1: 146- 148.
Zietkiewicz, E., Rafalski, A. & Labuda, D. 1994. Genome fingerprinting by simple-sequence repeat (SSR) anchored polymerase chain reaction amplification. Genomics 20: 176–183.